Publications

Ma J, Tsuboi T. (2024) Efficient Prediction Model of mRNA End-to-End Distance and Conformation: Three-Dimensional RNA Illustration Program (TRIP). Methods Mol Biol. 2024;2784:191-200.

Guo T, Modi O, Hirano J, Guzman H, Tsuboi T*. (2022) Single-chain models illustrate the 3D RNA folding shape during translation. Biophysical Reports, 100065. [*correspondence]

Tsuboi T*, Leff J, Zid BM*. (2020) Post-transcriptional control of mitochondrial protein composition in changing environmental conditions. (2020) Biochem Soc Trans. BST20200250. [*co-correspondence authors] Review

Tsuboi T*, Viana MP, Xu F, Yu J, Chanchani R, Arceo XG, Tutucci E, Choi J, Chen YS, Singer RH, Rafelski SM*, Zid BM*. (2020) Mitochondrial volume fraction and translation duration impact mitochondrial mRNA localization and protein synthesis. Elife, 9, e57814. https://doi.org/10.7554/eLife.57814. [*co-correspondence authors]

Tsuboi T, Yamazaki R, Nobuta R, Ikeuchi K, Makino S, Ohtaki A, Suzuki Y, Yoshihisa T, Trotta C, Inada T.  (2015) The tRNA Splicing Endonuclease Complex Cleaves the Mitochondria-localized CBP1 mRNA. The Journal of Biological Chemistry, 290(26), 16021-16030.

Izawa T, Tsuboi T, Kuroha K, Inada T, Nishikawa S, Endo T. (2012) Roles of dom34:hbs1 in nonstop protein clearance from translocators for normal organelle protein influx. Cell Reports, 2(3), 447-453

Tsuboi T, Kuroha K, Kudo K, Makino S, Inoue E, Kashima I, Inada T. (2012) Dom34:hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3' end of aberrant mRNA. Molecular Cell, 46(4), 518-529.

Tsuboi T, Inada T. (2010) Tethering of poly(A)-binding protein interferes with non-translated mRNA decay from the 5' end in yeast. The Journal of Biological Chemistry, 285(44), 33589-33601.

PrePrint

Khan AH, Patel RJ, Viana MP, Rafelski SM, Brown AI, Zid BM, Tsuboi T*. (2023) Mitochondrial protein heterogeneity stems from the stochastic nature of co-translational protein targeting in cell senescence, bioRxiv, 2023.12.03.569753. [*correspondence]

[Published in Biophysical Reports] Guo T, Modi O, Hirano J, Guzman H, Tsuboi T*. (2021) Single-chain models illustrate the 3D RNA folding shape during translation. bioRxiv, 2021.11.25.470027. [*correspondence]